@> 6167 atoms and 1 coordinate set(s) were parsed in 0.16s.
@> 3328 atoms and 1 coordinate set(s) were parsed in 0.09s.
Visualizations and results¶
Original Structure Visualization¶
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@> 6167 atoms and 1 coordinate set(s) were parsed in 0.16s.
@> 3328 atoms and 1 coordinate set(s) were parsed in 0.09s.
3j9cA_TEMP Blue:4h2aA Red:3j9cA
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AlphaFold predictions¶
Best AF prediction to fold 1¶
@> 5593 atoms and 1 coordinate set(s) were parsed in 0.15s.
@> 6167 atoms and 1 coordinate set(s) were parsed in 0.16s.
@> 5593 atoms and 1 coordinate set(s) were parsed in 0.15s.
@> 6167 atoms and 1 coordinate set(s) were parsed in 0.16s.
4h2aA_TEMP Blue:ShallowMsa_001_unrelaxed_rank_003_alphafold2_ptm_model_2_seed_000 Red:4h2aA
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Best AF prediction to fold 2¶
@> 5593 atoms and 1 coordinate set(s) were parsed in 0.15s.
@> 3328 atoms and 1 coordinate set(s) were parsed in 0.09s.
@> 5593 atoms and 1 coordinate set(s) were parsed in 0.15s.
@> 3328 atoms and 1 coordinate set(s) were parsed in 0.09s.
3j9cA_TEMP Blue:ShallowMsa_004_unrelaxed_rank_004_alphafold2_ptm_model_1_seed_000 Red:3j9cA
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EsmFold Prediction¶
Best EsmFold prediction to fold 1¶
@> 6167 atoms and 1 coordinate set(s) were parsed in 0.16s.
@> 4417 atoms and 1 coordinate set(s) were parsed in 0.12s.
@> 6167 atoms and 1 coordinate set(s) were parsed in 0.16s.
reference and target coordinate arrays must have same number of atoms
@> 4417 atoms and 1 coordinate set(s) were parsed in 0.12s.
ShallowMsa_005_2_TEMP Blue:4h2aA Red:ShallowMsa_005_2
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Best EsmFold prediction to fold 2¶
@> 3328 atoms and 1 coordinate set(s) were parsed in 0.09s.
@> 4369 atoms and 1 coordinate set(s) were parsed in 0.12s.
@> 3328 atoms and 1 coordinate set(s) were parsed in 0.09s.
@> 4369 atoms and 1 coordinate set(s) were parsed in 0.11s.
reference and target coordinate arrays must have same number of atoms
ShallowMsa_006_3_TEMP Blue:3j9cA Red:ShallowMsa_006_3
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Contact maps Msa Transformers¶
No max_f1Score_pdb2
No max_f1Score_pdb2
No plot for f1Score_1 No plot for f1Score_2